Runtimes for ONNX#
Python Runtime = ‘python’#
This module implements a python runtime for ONNX.
It is a work constantly in progress. It was started to
facilitate the implementation of scikit-learn
converters in sklearn-onnx.
Main class is OnnxInference.
<<<
import numpy
from sklearn.linear_model import LinearRegression
from sklearn.datasets import load_iris
from sklearn.model_selection import train_test_split
from mlprodict.onnxrt import OnnxInference
from mlprodict.onnx_conv import to_onnx
iris = load_iris()
X, y = iris.data, iris.target
X_train, X_test, y_train, _ = train_test_split(X, y)
clr = LinearRegression()
clr.fit(X_train, y_train)
# predictions with scikit-learn
exp = clr.predict(X_test[:5])
print(exp)
# predictions with onnxruntime
model_def = to_onnx(clr, X_train.astype(numpy.float32),
target_opset=12)
oinf = OnnxInference(model_def)
y = oinf.run({'X': X_test[:5]})
print(y)
>>>
[1.346 0.056 1.714 0.117 1.885]
{'variable': array([[1.346],
[0.056],
[1.714],
[0.117],
[1.885]])}
Some ONNX operators converters are using were not all available in older version of ONNX. This version is called opset number. ONNX 1.4.0 is opset 9, ONNX 1.5.0 is opset 10… Next table shows which operator is available in which opset. An empty cell means it is not available. Other cells contains concatenated flags whose meaning is the following:
ERRORmeans the automated process failed to give a appropriate status or the runtime produces predictions too far from the original predictions, the second part of the constant gives an approximate diagnostic, last columns gives the exception message,OK: the converter works fine and the runtime produces predictions almost equal to the orignal predictions, relative difference is below
,e<%f: the converter works fine and the runtime produces predictions close to the orignal predictions, relative difference is below the threshold,i/j: the model was converted for a specific opset but the converted ONNX is compatible with smaller opset, i is the smallest compatible opset for the main domain, j is the smallest compatible opset for the ai domain,
The model are tested through simple problems using the Iris dataset.
The datasets is split into train test datasets.
Function find_suitable_problem gives
the list of problem every scikit-learn is tested on.
The main ones are the following:
b-cm: binary classification,
m-cl: multi-class classification,
reg: regression,
cluster: clutering,
outlier: outlier detection,
num-tr: no label, only numerical features
The full list is given by find_suitable_problem.
Next table tracks what is available,
what is working and some indication about
the cause of the error if it does not work.
<<<
from logging import getLogger
from pyquickhelper.loghelper import noLOG
from pandas import DataFrame
from pyquickhelper.pandashelper import df2rst
from sklearn.exceptions import ConvergenceWarning
from sklearn.utils._testing import ignore_warnings
from mlprodict.onnxrt.validate import enumerate_validated_operator_opsets, summary_report
@ignore_warnings(category=(UserWarning, ConvergenceWarning, RuntimeWarning, FutureWarning))
def build_table():
logger = getLogger('skl2onnx')
logger.disabled = True
rows = list(enumerate_validated_operator_opsets(
0, debug=None, fLOG=noLOG,
models=['LinearRegression', 'LogisticRegression'],
benchmark=True))
df = DataFrame(rows)
piv = summary_report(df)
if "ERROR-msg" in piv.columns:
def shorten(text):
text = str(text)
if len(text) > 75:
text = text[:75] + "..."
return text
piv["ERROR-msg"] = piv["ERROR-msg"].apply(shorten)
print(df2rst(piv, number_format=2,
replacements={'nan': '', 'ERR: 4convert': ''}))
build_table()
>>>
name |
problem |
scenario |
optim |
method_name |
output_index |
conv_options |
inst |
n_features |
runtime |
skl_version |
skl_nop |
skl_ncoef |
skl_nlin |
onx_size |
onx_nnodes |
onx_ninits |
onx_producer_name |
onx_producer_version |
onx_ai.onnx.ml |
onx_size_optim |
onx_nnodes_optim |
onx_ninits_optim |
onx_op_Reshape |
onx_op_Cast |
onx_op_ZipMap |
opset17 |
RT/SKL-N=1 |
N=10 |
N=100 |
N=1000 |
N=10000 |
RT/SKL-N=1-min |
RT/SKL-N=1-max |
N=10-min |
N=10-max |
N=100-min |
N=100-max |
N=1000-min |
N=1000-max |
N=10000-min |
N=10000-max |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LinearRegression |
b-reg |
default |
predict |
0 |
{} |
null |
4 |
python |
1.2.1 |
1 |
4 |
1 |
259 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
259 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.41 |
0.41 |
0.41 |
0.43 |
0.51 |
0.39 |
0.43 |
0.39 |
0.43 |
0.36 |
0.47 |
0.39 |
0.47 |
0.42 |
0.63 |
|
LinearRegression |
m-reg |
default |
predict |
0 |
{} |
null |
4 |
python |
1.2.1 |
1 |
2 |
1 |
301 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
301 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.4 |
0.41 |
0.42 |
0.51 |
0.76 |
0.39 |
0.43 |
0.38 |
0.43 |
0.39 |
0.46 |
0.48 |
0.54 |
0.71 |
0.82 |
|
LinearRegression |
~b-reg-64 |
default |
predict |
0 |
{} |
null |
4 |
python |
1.2.1 |
1 |
4 |
1 |
365 |
3 |
3 |
skl2onnx |
1.13.1 |
-1 |
365 |
3 |
3 |
1 |
-1 |
-1 |
OK 13/ |
1.2 |
1.2 |
1.2 |
1.1 |
1.1 |
1 |
1.2 |
1.1 |
1.3 |
1.1 |
1.3 |
1 |
1.2 |
0.92 |
1.3 |
|
LinearRegression |
~m-reg-64 |
default |
predict |
0 |
{} |
null |
4 |
python |
1.2.1 |
1 |
2 |
1 |
405 |
3 |
3 |
skl2onnx |
1.13.1 |
-1 |
405 |
3 |
3 |
1 |
-1 |
-1 |
OK 13/ |
1.1 |
1.2 |
1.1 |
1.1 |
1 |
1 |
1.2 |
1.1 |
1.2 |
1 |
1.3 |
1 |
1.2 |
1 |
1 |
|
LogisticRegression |
b-cl |
liblinear |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
1 |
1 |
652 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
652 |
4 |
0 |
-1 |
1 |
1 |
OK 9/1 |
0.78 |
0.84 |
0.83 |
1.1 |
1.6 |
0.68 |
0.82 |
0.79 |
0.96 |
0.72 |
0.93 |
1 |
1.2 |
1.5 |
1.6 |
|
LogisticRegression |
b-cl |
liblinear |
{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
1 |
1 |
496 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
496 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.61 |
0.65 |
0.66 |
0.96 |
1.5 |
0.53 |
0.65 |
0.62 |
0.68 |
0.57 |
0.74 |
0.89 |
1.1 |
1.5 |
1.6 |
LogisticRegression |
b-cl |
liblinear |
onnx |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
1 |
1 |
652 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
652 |
4 |
0 |
-1 |
1 |
1 |
OK 9/1 |
|||||||||||||||
LogisticRegression |
b-cl |
liblinear |
onnx/{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
1 |
1 |
496 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
496 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
|||||||||||||||
LogisticRegression |
m-cl |
liblinear |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
3 |
1 |
681 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
681 |
4 |
0 |
-1 |
1 |
1 |
OK 9/1 |
0.95 |
0.96 |
0.9 |
0.76 |
0.67 |
0.81 |
1 |
0.9 |
1.1 |
0.82 |
1 |
0.71 |
0.81 |
0.66 |
0.68 |
|
LogisticRegression |
m-cl |
liblinear |
{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
3 |
1 |
523 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
523 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.74 |
0.75 |
0.72 |
0.67 |
0.65 |
0.63 |
0.79 |
0.71 |
0.79 |
0.66 |
0.81 |
0.63 |
0.71 |
0.64 |
0.65 |
LogisticRegression |
m-cl |
liblinear |
onnx |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
3 |
1 |
681 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
681 |
4 |
0 |
-1 |
1 |
1 |
OK 9/1 |
|||||||||||||||
LogisticRegression |
m-cl |
liblinear |
onnx/{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
3 |
1 |
523 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
523 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
|||||||||||||||
LogisticRegression |
~b-cl-64 |
liblinear |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
1 |
1 |
1161 |
13 |
5 |
skl2onnx |
1.13.1 |
1 |
1161 |
13 |
5 |
1 |
3 |
1 |
OK 13/1 |
2.3 |
2.5 |
2.6 |
3.4 |
5.1 |
1.9 |
2.5 |
2.3 |
2.6 |
2.3 |
2.7 |
3.1 |
3.7 |
4.9 |
5.3 |
|
LogisticRegression |
~b-cl-64 |
liblinear |
{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
1 |
1 |
1004 |
11 |
5 |
skl2onnx |
1.13.1 |
1 |
1004 |
11 |
5 |
1 |
2 |
-1 |
OK 13/1 |
2.1 |
2.2 |
2.3 |
3.1 |
5 |
1.8 |
2.3 |
2.1 |
2.4 |
2.1 |
2.5 |
2.9 |
3.3 |
4.8 |
5.2 |
LogisticRegression |
~b-cl-64 |
liblinear |
onnx |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
1 |
1 |
1161 |
13 |
5 |
skl2onnx |
1.13.1 |
1 |
1161 |
13 |
5 |
1 |
3 |
1 |
OK 13/1 |
|||||||||||||||
LogisticRegression |
~b-cl-64 |
liblinear |
onnx/{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
1 |
1 |
1004 |
11 |
5 |
skl2onnx |
1.13.1 |
1 |
1004 |
11 |
5 |
1 |
2 |
-1 |
OK 13/1 |
|||||||||||||||
LogisticRegression |
~b-cl-dec |
liblinear-dec |
{‘raw_scores’: True, ‘zipmap’: False} |
decision_function |
1 |
{“LogisticRegression”: {“raw_scores”: true, “zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
1 |
1 |
399 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
399 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.45 |
0.47 |
0.48 |
0.66 |
1.2 |
0.38 |
0.48 |
0.45 |
0.5 |
0.44 |
0.52 |
0.57 |
0.74 |
1.2 |
1.3 |
LogisticRegression |
~m-cl-dec |
liblinear-dec |
{‘raw_scores’: True, ‘zipmap’: False} |
decision_function |
1 |
{“LogisticRegression”: {“raw_scores”: true, “zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
python |
1.2.1 |
1 |
3 |
1 |
426 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
426 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.5 |
0.5 |
0.51 |
0.63 |
0.83 |
0.47 |
0.52 |
0.41 |
0.53 |
0.43 |
0.58 |
0.57 |
0.68 |
0.77 |
0.89 |
Full results are available at l-onnx-bench-python.
python_compiled#
This runtime is almost the same as the previous one but it creates and compiles a dedicated function to call every node of the graph. Graph operations are faster but it is not possible to look into every intermediate node anymore.
<<<
import numpy
from sklearn.ensemble import AdaBoostRegressor
from sklearn.datasets import load_iris
from sklearn.model_selection import train_test_split
from mlprodict.onnxrt import OnnxInference
from mlprodict.onnx_conv import to_onnx
iris = load_iris()
X, y = iris.data, iris.target
X_train, X_test, y_train, _ = train_test_split(X, y)
clr = AdaBoostRegressor(n_estimators=5)
clr.fit(X_train, y_train)
model_def = to_onnx(clr, X_train.astype(numpy.float32),
target_opset=12)
oinf = OnnxInference(model_def, runtime="python_compiled")
print(oinf)
>>>
OnnxInference(...)
def compiled_run(dict_inputs, yield_ops=None, context=None, attributes=None):
if yield_ops is not None:
raise NotImplementedError('yields_ops should be None.')
# init: axis_name (axis_name)
# init: estimators_weights (estimators_weights)
# init: half_scalar (half_scalar)
# init: k_value (k_value)
# init: last_index (last_index)
# init: negate (negate)
# init: shape_tensor (shape_tensor)
# inputs
X = dict_inputs['X']
(est_label_0, ) = n0_treeensembleregressor_3(X)
(est_label_4, ) = n1_treeensembleregressor_3(X)
(est_label_2, ) = n2_treeensembleregressor_3(X)
(est_label_1, ) = n3_treeensembleregressor_3(X)
(est_label_3, ) = n4_treeensembleregressor_3(X)
(concatenated_labels, ) = n5_concat(est_label_0, est_label_1, est_label_2, est_label_3, est_label_4)
(negated_labels, ) = n6_mul(concatenated_labels, negate)
(sorted_values, sorted_indices, ) = n7_topk_11(negated_labels, k_value)
(array_feat_extractor_output, ) = n8_arrayfeatureextractor(estimators_weights, sorted_indices)
(reshaped_weights, ) = n9_reshape_5(array_feat_extractor_output, shape_tensor)
(weights_cdf, ) = n10_cumsum(reshaped_weights, axis_name)
(median_value, ) = n11_arrayfeatureextractor(weights_cdf, last_index)
(comp_value, ) = n12_mul(median_value, half_scalar)
(median_or_above, ) = n13_less(weights_cdf, comp_value)
(cast_result, ) = n14_cast(median_or_above)
(median_idx, ) = n15_argmin_12(cast_result)
(median_estimators, ) = n16_gatherelements(sorted_indices, median_idx)
(variable, ) = n17_gatherelements(concatenated_labels, median_estimators)
return {
'variable': variable,
}
onnxruntime1#
onnxruntime loads the ONNX data in a single session and calls it onle once to compute the predictions. We create a table similar to Python Runtime = ‘python’.
<<<
from logging import getLogger
from pyquickhelper.loghelper import noLOG
from pandas import DataFrame
from pyquickhelper.pandashelper import df2rst
from sklearn.exceptions import ConvergenceWarning
from sklearn.utils._testing import ignore_warnings
from mlprodict.onnxrt.validate import enumerate_validated_operator_opsets, summary_report
@ignore_warnings(category=(UserWarning, ConvergenceWarning, RuntimeWarning, FutureWarning))
def build_table():
logger = getLogger('skl2onnx')
logger.disabled = True
rows = list(enumerate_validated_operator_opsets(
0, debug=None, fLOG=noLOG, runtime='onnxruntime1',
models=['LinearRegression', 'LogisticRegression'],
benchmark=True))
df = DataFrame(rows)
piv = summary_report(df)
if "ERROR-msg" in piv.columns:
def shorten(text):
text = str(text)
if len(text) > 75:
text = text[:75] + "..."
return text
piv["ERROR-msg"] = piv["ERROR-msg"].apply(shorten)
print(df2rst(piv, number_format=2,
replacements={'nan': '', 'ERR: 4convert': ''}))
build_table()
>>>
name |
problem |
scenario |
optim |
method_name |
output_index |
conv_options |
inst |
n_features |
runtime |
skl_version |
skl_nop |
skl_ncoef |
skl_nlin |
onx_size |
onx_nnodes |
onx_ninits |
onx_producer_name |
onx_producer_version |
onx_ai.onnx.ml |
onx_size_optim |
onx_nnodes_optim |
onx_ninits_optim |
onx_op_Reshape |
onx_op_Cast |
onx_op_ZipMap |
opset17 |
ERROR-msg |
RT/SKL-N=1 |
N=10 |
N=100 |
N=1000 |
N=10000 |
RT/SKL-N=1-min |
RT/SKL-N=1-max |
N=10-min |
N=10-max |
N=100-min |
N=100-max |
N=1000-min |
N=1000-max |
N=10000-min |
N=10000-max |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LinearRegression |
b-reg |
default |
predict |
0 |
{} |
null |
4 |
onnxruntime1 |
1.2.1 |
1 |
4 |
1 |
259 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
259 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
1.5 |
0.82 |
0.76 |
0.89 |
1.7 |
0.71 |
8.2 |
0.72 |
1.2 |
0.69 |
0.89 |
0.8 |
0.98 |
1.5 |
2 |
||
LinearRegression |
m-reg |
default |
predict |
0 |
{} |
null |
4 |
onnxruntime1 |
1.2.1 |
1 |
2 |
1 |
301 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
301 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.73 |
0.72 |
0.71 |
0.77 |
0.96 |
0.7 |
0.78 |
0.67 |
0.96 |
0.66 |
0.8 |
0.72 |
0.84 |
0.87 |
1.1 |
||
LinearRegression |
~b-reg-64 |
default |
predict |
0 |
{} |
null |
4 |
onnxruntime1 |
1.2.1 |
1 |
4 |
1 |
365 |
3 |
3 |
skl2onnx |
1.13.1 |
-1 |
365 |
3 |
3 |
1 |
-1 |
-1 |
OK 13/ |
2.5 |
1.6 |
1.6 |
2.1 |
3.7 |
1.4 |
13 |
1.4 |
2.1 |
1.5 |
1.7 |
1.9 |
2.3 |
2.7 |
6.2 |
||
LinearRegression |
~m-reg-64 |
default |
predict |
0 |
{} |
null |
4 |
onnxruntime1 |
1.2.1 |
1 |
2 |
1 |
405 |
3 |
3 |
skl2onnx |
1.13.1 |
-1 |
405 |
3 |
3 |
1 |
-1 |
-1 |
OK 13/ |
1.5 |
1.5 |
1.5 |
1.7 |
1.9 |
1.4 |
1.7 |
1.4 |
2 |
1.4 |
1.6 |
1.5 |
1.8 |
1.8 |
2 |
||
LogisticRegression |
b-cl |
liblinear |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
1 |
1 |
652 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
652 |
4 |
0 |
-1 |
1 |
1 |
OK 9/1 |
0.99 |
1.1 |
1.3 |
4 |
7.9 |
0.92 |
1.3 |
0.97 |
1.2 |
1.2 |
1.4 |
3.6 |
4.3 |
6.4 |
10 |
||
LogisticRegression |
b-cl |
liblinear |
{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
1 |
1 |
496 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
496 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.63 |
0.64 |
0.73 |
0.77 |
0.87 |
0.59 |
0.77 |
0.6 |
0.67 |
0.58 |
1.4 |
0.71 |
0.83 |
0.7 |
1.1 |
|
LogisticRegression |
b-cl |
liblinear |
onnx |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
1 |
1 |
652 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
652 |
4 |
0 |
-1 |
1 |
1 |
OK 9/1 |
||||||||||||||||
LogisticRegression |
b-cl |
liblinear |
onnx/{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
1 |
1 |
496 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
496 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
||||||||||||||||
LogisticRegression |
m-cl |
liblinear |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
3 |
1 |
681 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
681 |
4 |
0 |
-1 |
1 |
1 |
OK 9/1 |
1.2 |
1.2 |
1.4 |
3.1 |
4.7 |
1.1 |
1.5 |
1.1 |
1.2 |
1.2 |
1.5 |
2.9 |
3.3 |
4.7 |
4.8 |
||
LogisticRegression |
m-cl |
liblinear |
{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
3 |
1 |
523 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
523 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.77 |
0.72 |
0.75 |
0.54 |
0.45 |
0.73 |
0.91 |
0.67 |
0.76 |
0.59 |
1.5 |
0.51 |
0.57 |
0.45 |
0.46 |
|
LogisticRegression |
m-cl |
liblinear |
onnx |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
3 |
1 |
681 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
681 |
4 |
0 |
-1 |
1 |
1 |
OK 9/1 |
||||||||||||||||
LogisticRegression |
m-cl |
liblinear |
onnx/{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
3 |
1 |
523 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
523 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
||||||||||||||||
LogisticRegression |
~b-cl-64 |
liblinear |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
1 |
1 |
1161 |
13 |
5 |
skl2onnx |
1.13.1 |
1 |
1161 |
13 |
5 |
1 |
3 |
1 |
ERR: 5ort_load |
Unable to create InferenceSession due to ‘[ONNXRuntimeError] : 10 : INVALID… |
||||||||||||||||
LogisticRegression |
~b-cl-64 |
liblinear |
{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
1 |
1 |
1004 |
11 |
5 |
skl2onnx |
1.13.1 |
1 |
1004 |
11 |
5 |
1 |
2 |
-1 |
OK 13/1 |
2.5 |
2.7 |
2.6 |
2.9 |
3.8 |
2.3 |
2.9 |
2.4 |
4.3 |
2.3 |
2.8 |
2.7 |
3.1 |
3.7 |
3.9 |
|
LogisticRegression |
~b-cl-64 |
liblinear |
onnx |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
1 |
1 |
1161 |
13 |
5 |
skl2onnx |
1.13.1 |
1 |
1161 |
13 |
5 |
1 |
3 |
1 |
ERR: 5ort_load |
Unable to create InferenceSession due to ‘[ONNXRuntimeError] : 10 : INVALID… |
|||||||||||||||
LogisticRegression |
~b-cl-64 |
liblinear |
onnx/{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
1 |
1 |
1004 |
11 |
5 |
skl2onnx |
1.13.1 |
1 |
1004 |
11 |
5 |
1 |
2 |
-1 |
OK 13/1 |
||||||||||||||||
LogisticRegression |
~b-cl-dec |
liblinear-dec |
{‘raw_scores’: True, ‘zipmap’: False} |
decision_function |
1 |
{“LogisticRegression”: {“raw_scores”: true, “zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
1 |
1 |
399 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
399 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.64 |
0.64 |
0.65 |
0.85 |
1.6 |
0.61 |
0.71 |
0.59 |
0.87 |
0.6 |
0.73 |
0.79 |
0.96 |
1.5 |
1.7 |
|
LogisticRegression |
~m-cl-dec |
liblinear-dec |
{‘raw_scores’: True, ‘zipmap’: False} |
decision_function |
1 |
{“LogisticRegression”: {“raw_scores”: true, “zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime1 |
1.2.1 |
1 |
3 |
1 |
426 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
426 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.71 |
0.7 |
0.71 |
0.79 |
0.97 |
0.66 |
0.76 |
0.66 |
0.95 |
0.6 |
0.78 |
0.72 |
0.84 |
0.93 |
1 |
Full results are available at Availability of scikit-learn model for runtime onnxruntime1.
Profiling
onnxruntime has a tool to verify and test ONNX graphs: onnxruntime_perf_test. It measures the execution time for a graph. It can also be used to profile the code of onnxruntime. On Windows (but it also works on Linux):
Creates an onnx graph and its inputs as protobug. Places them in a folder like explained in the page onnxruntime_perf_test.
Clone and compile onnxruntime using release with debug information,
python tools/ci_build/build.py --build_dir build_dir --config RelWithDebInfo --build_wheel --use_openmp --use_mklml --numpy_version= --skip_onnx_testsOpen Visual Studio and modifies the command line of onnxruntime_perf_test.exe as:
-s -t 30 <model.onnx> <anything.txt>. Select it as startup project.Starts the profiling.
onnxruntime2: independent onnxruntime for every node#
This runtime does not load the ONNX data in a single session but instead calls onnxruntime for each node independently. This was developped mostly to facilitate the implementation of converters from scikit-learn object to ONNX. We create a table similar to Python Runtime = ‘python’.
<<<
from logging import getLogger
from pyquickhelper.loghelper import noLOG
from pandas import DataFrame
from pyquickhelper.pandashelper import df2rst
from sklearn.exceptions import ConvergenceWarning
from sklearn.utils._testing import ignore_warnings
from mlprodict.onnxrt.validate import enumerate_validated_operator_opsets, summary_report
@ignore_warnings(category=(UserWarning, ConvergenceWarning, RuntimeWarning, FutureWarning))
def build_table():
logger = getLogger('skl2onnx')
logger.disabled = True
rows = list(enumerate_validated_operator_opsets(
0, debug=None, fLOG=noLOG, runtime='onnxruntime2',
models=['LinearRegression', 'LogisticRegression'],
benchmark=True))
df = DataFrame(rows)
piv = summary_report(df)
if "ERROR-msg" in piv.columns:
def shorten(text):
text = str(text)
if len(text) > 75:
text = text[:75] + "..."
return text
piv["ERROR-msg"] = piv["ERROR-msg"].apply(shorten)
print(df2rst(piv, number_format=2,
replacements={'nan': '', 'ERR: 4convert': ''}))
build_table()
>>>
name |
problem |
scenario |
optim |
method_name |
output_index |
conv_options |
inst |
n_features |
runtime |
skl_version |
skl_nop |
skl_ncoef |
skl_nlin |
onx_size |
onx_nnodes |
onx_ninits |
onx_producer_name |
onx_producer_version |
onx_ai.onnx.ml |
onx_size_optim |
onx_nnodes_optim |
onx_ninits_optim |
onx_op_Reshape |
onx_op_Cast |
onx_op_ZipMap |
opset17 |
ERROR-msg |
RT/SKL-N=1 |
N=10 |
N=100 |
N=1000 |
N=10000 |
RT/SKL-N=1-min |
RT/SKL-N=1-max |
N=10-min |
N=10-max |
N=100-min |
N=100-max |
N=1000-min |
N=1000-max |
N=10000-min |
N=10000-max |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
LinearRegression |
b-reg |
default |
predict |
0 |
{} |
null |
4 |
onnxruntime2 |
1.2.1 |
1 |
4 |
1 |
259 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
259 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.57 |
0.57 |
0.58 |
0.69 |
1.6 |
0.55 |
0.6 |
0.55 |
0.6 |
0.5 |
0.73 |
0.59 |
0.77 |
1.4 |
1.8 |
||
LinearRegression |
m-reg |
default |
predict |
0 |
{} |
null |
4 |
onnxruntime2 |
1.2.1 |
1 |
2 |
1 |
301 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
301 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.56 |
0.55 |
0.56 |
0.65 |
0.72 |
0.55 |
0.59 |
0.52 |
0.6 |
0.51 |
0.64 |
0.6 |
0.7 |
0.59 |
0.86 |
||
LinearRegression |
~b-reg-64 |
default |
predict |
0 |
{} |
null |
4 |
onnxruntime2 |
1.2.1 |
1 |
4 |
1 |
365 |
3 |
3 |
skl2onnx |
1.13.1 |
-1 |
365 |
3 |
3 |
1 |
-1 |
-1 |
OK 13/ |
1.6 |
1.6 |
1.7 |
2.2 |
5.6 |
1.6 |
1.7 |
1.6 |
1.7 |
1.5 |
1.8 |
2 |
2.4 |
5 |
6.3 |
||
LinearRegression |
~m-reg-64 |
default |
predict |
0 |
{} |
null |
4 |
onnxruntime2 |
1.2.1 |
1 |
2 |
1 |
405 |
3 |
3 |
skl2onnx |
1.13.1 |
-1 |
405 |
3 |
3 |
1 |
-1 |
-1 |
OK 13/ |
1.6 |
1.6 |
1.6 |
1.8 |
2.1 |
1.5 |
1.6 |
1.5 |
1.6 |
1.4 |
1.7 |
1.6 |
1.9 |
2 |
2.1 |
||
LogisticRegression |
b-cl |
liblinear |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
1 |
1 |
652 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
652 |
4 |
0 |
-1 |
1 |
1 |
ERR: 5ort_load |
Unable to load node ‘ZipMap’ (output type was guessed) inputs=[(‘probabilit… |
||||||||||||||||
LogisticRegression |
b-cl |
liblinear |
{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
1 |
1 |
496 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
496 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.57 |
0.59 |
0.6 |
0.73 |
1 |
0.54 |
0.61 |
0.54 |
0.63 |
0.54 |
0.68 |
0.66 |
0.81 |
1 |
1 |
|
LogisticRegression |
b-cl |
liblinear |
onnx |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
1 |
1 |
652 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
652 |
4 |
0 |
-1 |
1 |
1 |
ERR: 5ort_load |
Unable to load node ‘ZipMap’ (output type was guessed) inputs=[(‘probabilit… |
|||||||||||||||
LogisticRegression |
b-cl |
liblinear |
onnx/{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
1 |
1 |
496 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
496 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
||||||||||||||||
LogisticRegression |
m-cl |
liblinear |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
3 |
1 |
681 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
681 |
4 |
0 |
-1 |
1 |
1 |
ERR: 5ort_load |
Unable to load node ‘ZipMap’ (output type was guessed) inputs=[(‘probabilit… |
||||||||||||||||
LogisticRegression |
m-cl |
liblinear |
{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
3 |
1 |
523 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
523 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.7 |
0.67 |
0.63 |
0.51 |
0.47 |
0.67 |
0.73 |
0.63 |
0.72 |
0.58 |
0.71 |
0.47 |
0.55 |
0.46 |
0.47 |
|
LogisticRegression |
m-cl |
liblinear |
onnx |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
3 |
1 |
681 |
4 |
0 |
skl2onnx |
1.13.1 |
1 |
681 |
4 |
0 |
-1 |
1 |
1 |
ERR: 5ort_load |
Unable to load node ‘ZipMap’ (output type was guessed) inputs=[(‘probabilit… |
|||||||||||||||
LogisticRegression |
m-cl |
liblinear |
onnx/{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
3 |
1 |
523 |
2 |
0 |
skl2onnx |
1.13.1 |
1 |
523 |
2 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
||||||||||||||||
LogisticRegression |
~b-cl-64 |
liblinear |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
1 |
1 |
1161 |
13 |
5 |
skl2onnx |
1.13.1 |
1 |
1161 |
13 |
5 |
1 |
3 |
1 |
ERR: 5ort_load |
Unable to load node ‘ZipMap’ (output type was guessed) inputs=[(‘probabilit… |
||||||||||||||||
LogisticRegression |
~b-cl-64 |
liblinear |
{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
1 |
1 |
1004 |
11 |
5 |
skl2onnx |
1.13.1 |
1 |
1004 |
11 |
5 |
1 |
2 |
-1 |
OK 13/1 |
3 |
3.1 |
3.1 |
3.3 |
1.3 |
2.7 |
3.1 |
3 |
3.2 |
2.8 |
3.3 |
3.1 |
3.6 |
1.2 |
1.3 |
|
LogisticRegression |
~b-cl-64 |
liblinear |
onnx |
predict_proba |
1 |
{} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
1 |
1 |
1161 |
13 |
5 |
skl2onnx |
1.13.1 |
1 |
1161 |
13 |
5 |
1 |
3 |
1 |
ERR: 5ort_load |
Unable to load node ‘ZipMap’ (output type was guessed) inputs=[(‘probabilit… |
|||||||||||||||
LogisticRegression |
~b-cl-64 |
liblinear |
onnx/{‘zipmap’: False} |
predict_proba |
1 |
{“LogisticRegression”: {“zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
1 |
1 |
1004 |
11 |
5 |
skl2onnx |
1.13.1 |
1 |
1004 |
11 |
5 |
1 |
2 |
-1 |
OK 13/1 |
||||||||||||||||
LogisticRegression |
~b-cl-dec |
liblinear-dec |
{‘raw_scores’: True, ‘zipmap’: False} |
decision_function |
1 |
{“LogisticRegression”: {“raw_scores”: true, “zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
1 |
1 |
399 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
399 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.64 |
0.49 |
0.51 |
0.71 |
0.042 |
0.46 |
3.4 |
0.47 |
0.52 |
0.43 |
0.57 |
0.64 |
0.76 |
0.037 |
0.048 |
|
LogisticRegression |
~m-cl-dec |
liblinear-dec |
{‘raw_scores’: True, ‘zipmap’: False} |
decision_function |
1 |
{“LogisticRegression”: {“raw_scores”: true, “zipmap”: false}} |
{“random_state”: 42, “solver”: “liblinear”} |
4 |
onnxruntime2 |
1.2.1 |
1 |
3 |
1 |
426 |
1 |
0 |
skl2onnx |
1.13.1 |
1 |
426 |
1 |
0 |
-1 |
-1 |
-1 |
OK 17/1 |
0.55 |
0.54 |
0.55 |
0.67 |
0.89 |
0.52 |
0.57 |
0.51 |
0.57 |
0.5 |
0.62 |
0.62 |
0.73 |
0.84 |
0.95 |
Full results are available at Availability of scikit-learn model for runtime onnxruntime1.