module graphhelper.linkage

Inheritance diagram of pyensae.graphhelper.linkage

Short summary

module pyensae.graphhelper.linkage

dendogram, heatmap functionalities.

It comes from linkage.py which I copied here because the module does not properly work on Python 3 (import issues). See also biokit license.

author

Thomas Cokelaer

source on GitHub

Classes

class

truncated documentation

Linkage

Linkage used in other tools such as Heatmap, the class requires scipy.

Methods

method

truncated documentation

__init__

unused

linkage

Mostly calls linkage. …

Documentation

dendogram, heatmap functionalities.

It comes from linkage.py which I copied here because the module does not properly work on Python 3 (import issues). See also biokit license.

author

Thomas Cokelaer

source on GitHub

class pyensae.graphhelper.linkage.Linkage[source]

Bases: object

Linkage used in other tools such as Heatmap, the class requires scipy.

source on GitHub

unused

source on GitHub

__init__()[source]

unused

source on GitHub

linkage(df, method, metric)[source]

Mostly calls linkage.

Parameters
Returns

output of linkage

source on GitHub